Ask FundThrough

Invoice Factoring

Invoice Factoring for QuickBooks: The Why & How

Small business owners have more financing options available them than ever before, including invoice factoring. Whether you’re looking for an invoice factoring solution that works well with QuickBooks Online or you need to know how to record an invoice in the platform, this post will give you a complete overview of invoice factoring for QuickBooks. To establish context, let’s go over a quick explanation of invoice factoring.

Why businesses use factoring

Factoring receivables is commonly used by companies who want to improve their cash flow and need quick access to cash. Oftentimes, B2B companies have large customers who require payment terms of 30, 60, or even 90 days or more. This puts them in a cash flow crunch if they need to make payroll, pay suppliers, or finance a big project in a short period of time. If the business owner has unpaid invoices, a factoring company (like FundThrough) will give them cash for the outstanding invoice, less a fee, way ahead of the payment terms. Then the factoring company will wait for the customer payment, collecting the outstanding balance in line with the original payment terms. If you want a more thorough explanation of factoring receivables, see our post, “What is Invoice Factoring?”

[Note: FundThrough is seamlessly integrated with QuickBooks so you can pull invoices you want to fund into our platform from your QuickBooks Online account. Get started here.]

Pros and cons of invoice factoring with Quickbooks

If you’re considering factoring company invoices, it makes sense to compare the pros and cons of factoring services in the context of using the platform. 

Advantages of invoice factoring include:

  • Grow your business by being able to finance large deals quickly
  • Reduced cash-flow issues from getting unpaid invoices paid
  • No debt creation because invoice factoring isn’t a loan
  • No need to give away equity in your company to get funding
  • Less admin work since you don’t have to handle accounts receivable
  • Increased peace of mind from receiving earlier payments
  • A factoring partner invested in your growth


Some potential disadvantages to invoice factoring include:

  • Concern about how a factoring firm will interact with your customers (Read more about how FundThrough works with your customers if you’re wondering about this.)
  • Depending on the invoice factoring company, you could be looking at a high factoring fee, hidden fees, or not getting the full invoice total advanced up front
  • Some invoice factoring companies will make you sign a factor agreement requiring you to do receivable factoring for all your invoices (instead of letting you choose which ones to factor)

Invoice factoring Quickbooks fees

The main factor fee is called the discount rate. This is the amount of money that invoice factoring companies withhold from the invoice total as their payment for advancing cash and waiting to get paid for you. You can expect to pay somewhere between 1 and 5 percent. Sometimes, however, factoring companies charge hidden fees on top of this depending on the factoring arrangement. 

The invoice factoring fees you can expect vary between companies and the type of factoring transaction. In addition to the percentage a factor keeps, sometimes there are hidden fees to watch out for:

  • ACH fee. This is the fee for the bank wiring funds to your account, passed on to you from the factoring firm.
  • Application fee. A flat or percentage fee that’s highly variable. 
  • Invoice processing fee. A fee charged for getting your invoices processed in the back office. 
  • Closing fee. An additional amount the invoice financing company keeps from the invoice
  • Monthly fee. If you sign a contract requiring that you sell a certain portion of your invoices each month and you don’t meet the minimum, you could end up paying this fee.
  • Termination fee. Again, this applies if you signed a contract and want to end it early. 


It’s easy to see how hidden fees can make the cost of invoice factoring for QuickBooks add up over time, making it an important question to ask any factoring company you’re considering. Here’s where you can more info about invoice factoring rates.

To give you our perspective, FundThrough’s fees depend on the funding option you choose. Velocity invoice factoring is typically a 2.5 percent to 5 percent factor fee. Express invoice financing is typically 6 percent. We don’t charge any hidden fees. See our pricing page for more on what you can expect to pay for invoice funding

Benefits of Integrating QuickBooks Online

QuickBooks Online is integrated with FundThrough. You can set up your FundThrough account by using QuickBooks so that your FundThrough dashboard is automatically populated with all your invoices. The benefits of this approach include:

  • Fast account set up
  • Save time without manually entering invoice data
  • Start the funding process with one click 

Step by step factoring process in Quickbooks

Accounting for factoring receivables can be tricky. We’ve broken down the process step by step for recording invoice factoring for QuickBooks. We’ve also included how recording factoring fees in QuickBooks Online works.

1. Create an account for factored invoices

In your Chart of Account, create a liabilities account just for factored invoices. You’ll use this account for the advances from your factored invoices and your original account for non-factored invoices.

2. Create an account for factoring fees

Follow the same steps as above to create an expense account for the factoring fees, including the discount fee. 

3. Create an invoice

Create an invoice just as you normally would. 

4. Record the received payment

When you receive the deposit in your bank account from the factoring company, record the payment in Received Payments from an account named Received from Factor or something similar. Record the dollar amount received and the invoice total in the description and reference number fields.

3. Record the deposit and balance accounts

Create a new bank deposit and choose the account for depositing the funds. Check the box next to the previously recorded payment (see the invoice number in the reference number section). In the Add New Deposits section, fill in the name of your liabilities account you created in Step 1. Enter the total of the advance as a negative number. (e.g., -10,000). Then fill out a second line in the Add New Deposits section with the name of your factoring fees account and enter the fees as a negative number.

Download: The Ultimate Invoice Factoring Guide Ebook. 47 Questions Answered. (Access here).

Ready to factor an invoice?

Get started by creating a free FundThrough account, or connecting your QuickBooks, OpenInvoice, or WorkBench account to start funding an invoice.